Difference between revisions of "Microorganisms"

From Libre Pathology
Jump to navigation Jump to search
m (ref wmsp)
m (APBR replace)
Line 22: Line 22:
| Fruiting heads when aerobic
| Fruiting heads when aerobic
| ? Immunosuppression
| ? Immunosuppression
| <ref>APBR P.682.</ref>
| <ref name=Ref_APBR682>{{Ref APBR|682}}</ref>
| [http://commons.wikimedia.org/w/index.php?title=File:Pulmonary_aspergillosis.jpg Aspergillus (WC)], [http://commons.wikimedia.org/wiki/File:Pulmonary_aspergillosis_cytology.jpg Aspergillus cytology (WC)]
| [http://commons.wikimedia.org/w/index.php?title=File:Pulmonary_aspergillosis.jpg Aspergillus (WC)], [http://commons.wikimedia.org/wiki/File:Pulmonary_aspergillosis_cytology.jpg Aspergillus cytology (WC)]
|-
|-
Line 32: Line 32:
| Granulomata assoc.
| Granulomata assoc.
| Diabetes, immunodeficient
| Diabetes, immunodeficient
| <ref>APBR P.682.</ref>
| <ref name=Ref_APBR682>{{Ref APBR|682}}</ref>
| [http://granuloma.homestead.com/ZygoHE_02.jpg Mucormycosis (homestead.com)], [http://commons.wikimedia.org/wiki/File:Zygomycosis.jpg Zygomycosis (WC)]
| [http://granuloma.homestead.com/ZygoHE_02.jpg Mucormycosis (homestead.com)], [http://commons.wikimedia.org/wiki/File:Zygomycosis.jpg Zygomycosis (WC)]
|-
|-
Line 42: Line 42:
| Other?
| Other?
| Immunodeficient
| Immunodeficient
| <ref>APBR P.682.</ref>
| <ref name=Ref_APBR682>{{Ref APBR|682}}</ref>
| [http://pathmicro.med.sc.edu/mycology/cocc3.jpg Coccidioidomycosis (med.sc.edu)] [http://commons.wikimedia.org/wiki/File:Coccidioides_immitis_on_Sabouraud%27s_medium.jpg C. immitis (WC)]
| [http://pathmicro.med.sc.edu/mycology/cocc3.jpg Coccidioidomycosis (med.sc.edu)] [http://commons.wikimedia.org/wiki/File:Coccidioides_immitis_on_Sabouraud%27s_medium.jpg C. immitis (WC)]
|-
|-
Line 52: Line 52:
| '''Intracellular (unlike candida), granulomata'''
| '''Intracellular (unlike candida), granulomata'''
| Source: soil with bird droppings
| Source: soil with bird droppings
| <ref>APBR P.682.</ref>
| <ref name=Ref_APBR682>{{Ref APBR|682}}</ref>
| [http://commons.wikimedia.org/wiki/File:Histoplasma_pas-d.jpg Histoplasmosis (WC)]
| [http://commons.wikimedia.org/wiki/File:Histoplasma_pas-d.jpg Histoplasmosis (WC)]
|-
|-
Line 62: Line 62:
| Granulomas, '''broad-based budding yeast'''
| Granulomas, '''broad-based budding yeast'''
| Habitat: Northeast America, Africa
| Habitat: Northeast America, Africa
| <ref>APBR P.682.</ref><ref>[http://pathmicro.med.sc.edu/mycology/mycology-6.htm http://pathmicro.med.sc.edu/mycology/mycology-6.htm]</ref>
| <ref name=Ref_APBR682>{{Ref APBR|682}}</ref><ref>[http://pathmicro.med.sc.edu/mycology/mycology-6.htm http://pathmicro.med.sc.edu/mycology/mycology-6.htm]</ref>
| [http://pathmicro.med.sc.edu/mycology/blast1.jpg Blastomyces]
| [http://pathmicro.med.sc.edu/mycology/blast1.jpg Blastomyces]
|-
|-
Line 72: Line 72:
| '''Multiple budding "steering wheel" appearance'''
| '''Multiple budding "steering wheel" appearance'''
| Clinical???
| Clinical???
| <ref>APBR P.682.</ref>
| <ref name=Ref_APBR682>{{Ref APBR|682}}</ref>
| [http://commons.wikimedia.org/wiki/File:Paracoccidioides_brasiliensis_01.jpg P. brasiliensis (WC)].
| [http://commons.wikimedia.org/wiki/File:Paracoccidioides_brasiliensis_01.jpg P. brasiliensis (WC)].
|-
|-
Line 82: Line 82:
| Usually in clusters of '''alveolar casts with a honeycomb appearance'''
| Usually in clusters of '''alveolar casts with a honeycomb appearance'''
| HIV/AIDS associated
| HIV/AIDS associated
| <ref>APBR P.684.</ref>
| <ref name=Ref_APBR684>{{Ref APBR|684}}</ref>
| [http://commons.wikimedia.org/wiki/File:Pneumocystosis_carinii_of_lung_in_AIDS_959_lores.jpg PCP (WC)]
| [http://commons.wikimedia.org/wiki/File:Pneumocystosis_carinii_of_lung_in_AIDS_959_lores.jpg PCP (WC)]
|-
|-
Line 92: Line 92:
| '''Prominent (i.e. thick polysaccharide) capsule'''
| '''Prominent (i.e. thick polysaccharide) capsule'''
| HIV/AIDS associated, most common CNS fungus
| HIV/AIDS associated, most common CNS fungus
| <ref>APBR P.682.</ref>
| <ref name=Ref_APBR682>{{Ref APBR|682}}</ref>
| [http://commons.wikimedia.org/wiki/File:Cryptococcosis_of_lung_in_patient_with_AIDS_Methenamine_silver_stain_963_lores.jpg Crytococcosis - methenamine silver (WC)], [http://commons.wikimedia.org/wiki/File:Cryptococcosis_of_lung_in_patient_with_AIDS._Mucicarmine_stain_962_lores.jpg Crytococcosis - mucicarmine (WC)].
| [http://commons.wikimedia.org/wiki/File:Cryptococcosis_of_lung_in_patient_with_AIDS_Methenamine_silver_stain_963_lores.jpg Crytococcosis - methenamine silver (WC)], [http://commons.wikimedia.org/wiki/File:Cryptococcosis_of_lung_in_patient_with_AIDS._Mucicarmine_stain_962_lores.jpg Crytococcosis - mucicarmine (WC)].
|}
|}
Line 131: Line 131:
==Cryptococcus==
==Cryptococcus==
*Usually ''C. neoformans'', fungus - opportunistic infection, typical location: lung.
*Usually ''C. neoformans'', fungus - opportunistic infection, typical location: lung.
*Most common fungus seen in CSF specimens.<ref>APBR P.682.</ref>
*Most common fungus seen in CSF specimens.<ref name=Ref_APBR682>{{Ref APBR|682}}</ref>


Appearance:
Appearance:
*Yeast:
*Yeast:
**Round/ovoid 5-15 micrometres (may resemble Histoplasma or Candida -- but often larger).
**Round/ovoid 5-15 micrometres (may resemble Histoplasma or Candida -- but often larger).
**Thick mucopolysacchardie capsule + refractile centre.<ref>APBR P.682.</ref>
**Thick mucopolysacchardie capsule + refractile centre.<ref name=Ref_APBR682>{{Ref APBR|682}}</ref>
**"Tear drop-shapped" budding pattern (useful to differentiate from Blastomyces, Histoplasma).<ref>APBR P.682.</ref>
**"Tear drop-shapped" budding pattern (useful to differentiate from Blastomyces, Histoplasma).<ref name=Ref_APBR682>{{Ref APBR|682}}</ref>


Images:
Images:

Revision as of 21:22, 8 July 2010

Microorganisms show-up every once in a while. It is essential to know 'em.

Microorganisms

Name (disease) Kingdom Size Shape Stains Other (microscopic) Clinical References Image
Aspergillus (aspergillosis) Fungi ? Hyphae that branching
with 45 degrees angle 		PAS-D Fruiting heads when aerobic ? Immunosuppression [1] Aspergillus (WC), Aspergillus cytology (WC)
Zygomycota (zygomycosis);
more specific
Mucorales (mucormycosis) 		Fungi ? Branching hyphae with variable width ? Granulomata assoc. Diabetes, immunodeficient [1] Mucormycosis (homestead.com), Zygomycosis (WC)
Coccidioides, usually C. immitis
(coccidioidomycosis) 		Fungi Large - 20-60 micrometers,
endospores 1-5 micrometers 		Spherules Stains? Other? Immunodeficient [1] Coccidioidomycosis (med.sc.edu) C. immitis (WC)
Histoplasma (histoplasmosis) Fungi 2-5 micrometers Spherical GMS Intracellular (unlike candida), granulomata Source: soil with bird droppings [1] Histoplasmosis (WC)
Blastomyces (Blastomycosis) Fungi 5-15 micrometres Spherical (yeast) Stains? Granulomas, broad-based budding yeast Habitat: Northeast America, Africa [1][2] Blastomyces
Paracoccidioides (Paracoccidioidomycosis) Fungi 6-60 micrometres Spherical (yeast) Stains? Multiple budding "steering wheel" appearance Clinical??? [1] P. brasiliensis (WC).
Pneumocystis jirovecii (Pneumocystis carinii pneumonia; abbrev. PCP) Fungi (previously thought to be a protozoan) 7-8 micrometres "Dented ping-pong ball" GMS Usually in clusters of alveolar casts with a honeycomb appearance HIV/AIDS associated [3] PCP (WC)
Cryptococcosis Fungi 5-15 micrometres Yeast GMS Prominent (i.e. thick polysaccharide) capsule HIV/AIDS associated, most common CNS fungus [1] Crytococcosis - methenamine silver (WC), Crytococcosis - mucicarmine (WC).

Notes:

  • Bold text = key features.

Fungi

  • There are lots of 'em. Below are a few of 'em.

Terminology:[4]

  • Hyphae = microscopic filamentous growth (of fungi) -- single cell.
  • Mycelial = filamentous network of hyphae.
  • Septae/septation = hyphae may be subdivided by septae -- if they aren't they are one mass of protoplasm. (?)
  • Dimorphism = exist in two forms; e.g. single cell (yeast) and mycelial growth.
  • Pseudohyphae = looks like hyphae --but branching pattern is created by separate cells.[5]

Tissue invasive fungi

Typically:[6]

  • Mucor
  • Aspergillus

Histoplasmosis

  • Histoplasma capulatum - primative fungus, typical location: lung.

Coccidiomycosis

Pneumocystis pneumonia (PCP)

  • Pneumocystis jirovecii (used to be called Pneumocystis carinii) - fungus (that used to be considered a parasite), typical location: lung.
    • Clinical: Opportunistic infection. May have subtle finding on chest x-ray.
    • "Dented ping-pong ball" appearance;[7] - remember PCP = ping-pong.
    • Approximately 7-8 micrometres in size - PCP (WP). Several images are here (WC).

Cryptococcus

  • Usually C. neoformans, fungus - opportunistic infection, typical location: lung.
  • Most common fungus seen in CSF specimens.[1]

Appearance:

  • Yeast:
    • Round/ovoid 5-15 micrometres (may resemble Histoplasma or Candida -- but often larger).
    • Thick mucopolysacchardie capsule + refractile centre.[1]
    • "Tear drop-shapped" budding pattern (useful to differentiate from Blastomyces, Histoplasma).[1]

Images:

Cryptosporidiosis

Notes:

  • Cryptosporidium parvum?[9]

Candidiasis

  • Commonly Candida albicans - yeast (fungus), locations: oral cavity, vagina.
  • Dimorphic - seen in two forms:
    • Pseudohyphae[8] - collections of many C. albicans cells in a branching pattern.
    • Yeast form - single cells, 10 to 12 micrometres in diameter, gram positive.[10]
  • Stains: PAS, methenamine silver.
  • Images:

Blastomycosis


Mucormycosis

General

  • Causative organism: Mucorales.
    • Kingdom: Fungi.
    • AKA Zygomycota (zygomycosis).
  • Assoc. with diabetes, immunodeficiency.

Histology

Features:[1]

  • Branching hyphae variable width.
  • Granulomata associated.

Image:

Worms

Strongyloides

  • Lung?

Features:

  • Long worms.
  • ~10-15 micrometers wide.

Echinococcus

  • Echinococcus granulosus.
  • Causes hydatid disease in the liver.

Features:

  • Hooklets.
  • Scoleces - knoblike anterior end of a tapeworm.[12]

Enterobius vermicularis

  • AKA pinworm.

Features:[13]

  • Ovoid eggs - double walled shells, one side flat.


Viruses

Many virus afflicit humans. Only a few of them can be diagnosed histologically.

Viral inclusions

Cowdry types:[14]

  • Cowdry type A inclusion:[15]
    • Round eosinophilic material surrounded by a clear halo.
  • Cowdry type B inclusion:[16]
    • Neuropathology thingy. (???)

Images:

Herpes simplex virus (HSV)

  • Canker sores - usually HSV-1.
  • Genital herpes - usually HSV-2.

Histology/cytology

Features:[17]

  • Clear "ground glass" nuclei.
    • Rim of peripheral chromatin.
  • Nuclear inclusions.
  • Multinucleation with nuclear molding, i.e. multiple nuclei that touch over a large surface area.

Image:

Cytomegalovirus (CMV)

Features:

  • Very large nucleus (as the name implies) with clearing.
  • Granular cytoplasmic inclusions (red on H&E sections).

Images:

Adenovirus

Features:

  • "Smudge" cells[18] - black/blue blob ~ 15 micrometers. (???)
    • Affects endothelial cells. (???)

Images:

Parvo B19

Features:

  • Big red nuclear inclusion.[20]

See also

References

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 Lefkowitch, Jay H. (2006). Anatomic Pathology Board Review (1st ed.). Saunders. pp. 682. ISBN 978-1416025887.
  2. ↑ http://pathmicro.med.sc.edu/mycology/mycology-6.htm
  3. ↑ Lefkowitch, Jay H. (2006). Anatomic Pathology Board Review (1st ed.). Saunders. pp. 684. ISBN 978-1416025887.
  4. ↑ http://www.fungionline.org.uk/1intro/3growth_forms.html
  5. ↑ http://pathmicro.med.sc.edu/mycology/mycology-3.htm
  6. ↑ CM 17 Apr 2009.
  7. ↑ 7.0 7.1 7.2 Humphrey, Peter A; Dehner, Louis P; Pfeifer, John D (2008). The Washington Manual of Surgical Pathology (1st ed.). Lippincott Williams & Wilkins. pp. 103. ISBN 978-0781765275.
  8. ↑ 8.0 8.1 8.2 Humphrey, Peter A; Dehner, Louis P; Pfeifer, John D (2008). The Washington Manual of Surgical Pathology (1st ed.). Lippincott Williams & Wilkins. pp. 3. ISBN 978-0781765275.
  9. ↑ http://www.dpd.cdc.gov/dpdx/HTML/Cryptosporidiosis.htm
  10. ↑ http://pathmicro.med.sc.edu/mycology/mycology-3.htm
  11. ↑ PMID 12375640
  12. ↑ http://www.thefreedictionary.com/scoleces. Accessed on: 10 January 2010.
  13. ↑ APBR P.685.
  14. ↑ URL: http://www.pathconsultddx.com/pathCon/largeImage?pii=S1559-8675%2806%2970864-6&figureId=fig3&ecomponentId=mmc3. Accessed: 12 January 2010.
  15. ↑ URL: http://www.whonamedit.com/synd.cfm/3495.html. Accessed on: 22 January 2010.
  16. ↑ http://www.whonamedit.com/synd.cfm/3496.html. Accessed on: 22 January 2010.
  17. ↑ SM. 11 January 2010.
  18. ↑ URL: http://www.pathguy.com/lectures/infect.htm. Accessed on: 8 July 2010.
  19. ↑ URL:http://www.medscape.com/viewarticle/438534_2. Accessed on: 8 July 2010.
  20. ↑ URL: http://www.pathguy.com/lectures/infect.htm. Accessed on: 8 July 2010.
Retrieved from "https://librepathology.org/w/index.php?title=Microorganisms&oldid=1059"